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wsidata 0.9.0.post4.dev0+f0353a8 documentation - Home wsidata 0.9.0.post4.dev0+f0353a8 documentation - Home
  • Installation
  • Introduction
  • API Reference
  • GitHub
  • Installation
  • Introduction
  • API Reference
  • GitHub

Section Navigation

  • wsidata.WSIData
  • wsidata.TileSpec
  • wsidata.SlideProperties
  • IO and Utilities Functions
    • wsidata.open_wsi
    • wsidata.agg_wsi
    • wsidata.concat_feature_anndata
    • wsidata.TileRequest
    • wsidata.shapes2tiles
  • Accessors
    • wsidata.FetchAccessor
    • wsidata.IterAccessor
    • wsidata.DatasetAccessor
    • wsidata.accessors.iter.TissueContour
    • wsidata.accessors.iter.TissueImage
    • wsidata.accessors.iter.TileImage
    • wsidata.register_wsidata_accessor
  • Torch Datasets
    • wsidata.dataset.TileImagesDataset
    • wsidata.dataset.TileFeatureDataset
    • wsidata.dataset.graph_data
  • WSI Readers
    • wsidata.reader.ReaderBase
    • wsidata.reader.OpenSlideReader
    • wsidata.reader.TiffSlideReader
    • wsidata.reader.FastSlideReader
    • wsidata.reader.BioFormatsReader
    • wsidata.reader.CuCIMReader
    • wsidata.reader.ISyntaxReader
    • wsidata.reader.PylibCZIReader
    • wsidata.reader.SpatialDataImage2DReader
  • API Reference

API Reference#

WSIData

A container class combining SpatialData and a whole slide image reader.

TileSpec

Data class for storing tile specifications.

SlideProperties

The properties of the slide

IO

IO and Utilities Functions

IO and Utilities Functions
Accessors

Accessors for WSIData

Accessors
Readers

Readers for opening WSI files

WSI Readers
Datasets

Torch datasets for training/inference

Torch Datasets
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