WSI Readers

All readers are registered under the READERS space.

from wsidata import READERS

To open a slide with any available reader:

READERS.try_open("sample.svs") # Select a good one
READERS.try_open("sample.svs", reader="bioformats")  # Only try bioformats

To retrieve a reader class

ReaderClass = READERS['openslide']
reader = ReaderClass('sample.svs')

ReaderBase	The base class for all reader
OpenSlideReader	Use OpenSlide to interface with image files.
TiffSlideReader	Use TiffSlide to interface with image files.
FastSlideReader	Use FastSlide to interface with image files.
BioFormatsReader	Use Bio-Formats to interface with image files.
CuCIMReader	Use CuCIM to interface with image files.
ISyntaxReader	Use pyisyntax to interface with Philips iSyntax whole-slide images.
PylibCZIReader	Use pylibCZIrw to interface with Zeiss CZI whole-slide images.
SpatialDataImage2DReader	A wrapper around spatialdata to interface with image files.